Monte Carlo Simulation of Polymers: Coarse-Grained Models
نویسندگان
چکیده
A coarse-grained simulation model eliminates microscopic degrees of freedom and represents a polymer by a simplified structure. A priori, two classes of coarse-grained models may be distinguished: those which are designed for a specific polymer and reflect the underlying atomistic details to some extent, and those which retain only the most basic features of a polymer chain (chain connectivity, short-range excluded-volume interactions, etc.). In this article we mainly focus on the second class of generic polymer models, while the first class of specific coarse-grained models is only touched upon briefly. Generic models are suited to explore general and universal properties of polymer systems, which occur particularly in the limit of long chains. The simulation of long chains represents a challenging problem due to the large relaxation times involved. We present some of the Monte Carlo approaches contrived to cope with this problem. More specifically, our review contains two main parts. One part (Sec. 5) deals with local and non-local updates of a polymer. While local moves allow to extract information on the physical polymer dynamics from Monte Carlo simulations, the chief aim of non-local moves is to accelerate the relaxation of the polymers. We discuss some examples for such non-local moves: the slithering-snake algorithm, the pivot algorithm, and its recently suggested variant, the double-pivot algorithm, which is particularly suited for the simulations of concentrated polymer solutions or melts. The second part (Sec. 6) focuses on modern Monte Carlo methods that were inspired by the Rosenbluth-Rosenbluth algorithm proposed in the 1950s to simulate self-avoiding walks. The modern variants discussed comprise the configuration-bias Monte Carlo method, its recent extension, the recoil-growth algorithm, and the pruned-enriched Rosenbluth method, an algorithm particularly adapted to the simulation of attractively interacting polymers.
منابع مشابه
Three-body interactions in complex fluids: virial coefficients from simulation finite-size effects.
A simulation technique is described for quantifying the contribution of three-body interactions to the thermodynamical properties of coarse-grained representations of complex fluids. The method is based on a new approach for determining virial coefficients from the measured volume-dependent asymptote of a certain structural function. By comparing the third virial coefficient B3 for a complex fl...
متن کاملKinetic Monte Carlo Simulation of Statistical Mechanical Models and Coarse-Grained Mesoscale Descriptions of Catalytic Reactionâ•fiDiffusion Processes: 1D Nanoporous and 2D Surface Systems
متن کامل
Multi-Scale Simulation of Hyperbranched Polymers
In a previous work, we described a multi-scale protocol for the simulation of the conformation and dynamics of macromolecules that was applied to dendrimer molecules proving its predictive capability by comparison with experimental data. That scheme is now employed in order to predict conformational properties (radius of gyration) and overall hydrodynamic properties (translational diffusion and...
متن کاملSystem-Size Dependence of Helix-Bundle Formation for Generic Semiflexible Polymers
Helical polymer bundles are an important fixture in biomolecular systems. The particular structural geometry of helix bundles is dependent on many factors including the length of the polymer chain. In this study, we performed Monte Carlo simulations of a coarse-grained model for helical polymers to determine the influence of polymer length on tertiary structure formation. Helical structures of ...
متن کاملMultiresolution Modeling of Semidilute Polymer Solutions: Coarse-Graining Using Wavelet-Accelerated Monte Carlo
We present a hierarchical coarse-graining framework for modeling semidilute polymer solutions, based on the wavelet-accelerated Monte Carlo (WAMC) method. This framework forms a hierarchy of resolutions to model polymers at length scales that cannot be reached via atomistic or even standard coarse-grained simulations. Previously, it was applied to simulations examining the structure of individu...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره شماره
صفحات -
تاریخ انتشار 2004